BEDTools
BEDTools: a powerful toolset for genome arithmetic.The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps andcomputing coverage.The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM.
https://bedtools.readthedocs.io/
Available modules
The overview below shows which BEDTools installations are available per target architecture in the HPCC module system, ordered based on software version (new to old).
To start using BEDTools, load one of these modules using a module load command like:
1 | |
(This data was automatically generated on Thu, 29 May 2025 at 12:00:16 EDT)
| neoverse_v1 | generic | zen2 | zen3 | zen4 | haswell | skylake_avx512 | |
|---|---|---|---|---|---|---|---|
| Grace Nodes | everywhere (except Grace nodes) | amd20 | amd22 | amd24 | intel16 | intel18,amd20-v100,amd21,intel21 | |
| BEDTools/2.31.0-GCC-12.3.0 | - | x | - | - | - | x | - |