BEDTools

BEDTools: a powerful toolset for genome arithmetic.The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps andcomputing coverage.The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM.

https://bedtools.readthedocs.io/

Available modules

The overview below shows which BEDTools installations are available per target architecture in the HPCC module system, ordered based on software version (new to old).

To start using BEDTools, load one of these modules using a module load command like:

module load BEDTools/2.31.0-GCC-12.3.0

(This data was automatically generated on Thu, 17 Jul 2025 at 12:00:15 EDT)

	gateway	generic	zen2	zen3	zen4	haswell	skylake_avx512
	Gateway nodes	everywhere (except Grace nodes)	amd20	amd22	amd24	intel16	intel18,amd20-v100,amd21,intel21
BEDTools/2.31.0-GCC-12.3.0	-	x	-	-	-	x	-