Bowtie
Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome.
http://bowtie-bio.sourceforge.net/index.shtml
Available modules
The overview below shows which Bowtie installations are available per target architecture in the HPCC module system, ordered based on software version (new to old).
To start using Bowtie, load one of these modules using a module load command like:
1 | |
(This data was automatically generated on Thu, 08 May 2025 at 12:07:26 EDT)
| neoverse_v1 | generic | zen2 | zen3 | zen4 | haswell | skylake_avx512 | |
|---|---|---|---|---|---|---|---|
| Grace Nodes | everywhere (except Grace nodes) | amd20 | amd22 | amd24 | intel16 | intel18,amd20-v100,amd21,intel21 | |
| Bowtie/1.3.1-GCC-12.3.0 | - | x | - | - | - | - | - |