CellRanger
Cell Ranger is a set of analysis pipelines that process Chromium single-cell RNA-seq output to align reads, generate gene-cell matrices and perform clustering and gene expression analysis.
Available modules
The overview below shows which CellRanger installations are available per target architecture in the HPCC module system, ordered based on software version (new to old).
To start using CellRanger, load one of these modules using a module load command like:
module load CellRanger/8.0.1
(This data was automatically generated on Thu, 22 Jan 2026 at 12:03:27 EST)
| gateway | generic | zen2 | zen3 | zen4 | skylake_avx512 | |
|---|---|---|---|---|---|---|
| Gateway nodes | everywhere (except Grace nodes) | amd20 | amd22 | amd24 | intel18,amd20-v100,amd21,intel21 | |
| CellRanger/8.0.1 | - | x | - | - | - | - |