CellRanger-ARC
Cell Ranger ARC is a set of analysis pipelines that process Chromium Single Cell Multiome ATAC + Gene Expression sequencing data to generate a variety of analyses pertaining to gene expression, chromatin accessibility and their linkage. Furthermore, since the ATAC and gene expression measurements are on the very same cell, we are able to perform analyses that link chromatin accessibility and gene expression.
Available modules
The overview below shows which CellRanger-ARC installations are available per target architecture in the HPCC module system, ordered based on software version (new to old).
To start using CellRanger-ARC, load one of these modules using a module load command like:
1 | |
(This data was automatically generated on Thu, 22 May 2025 at 12:00:16 EDT)
| neoverse_v1 | generic | zen2 | zen3 | zen4 | haswell | skylake_avx512 | |
|---|---|---|---|---|---|---|---|
| Grace Nodes | everywhere (except Grace nodes) | amd20 | amd22 | amd24 | intel16 | intel18,amd20-v100,amd21,intel21 | |
| CellRanger-ARC/2.0.2 | - | x | - | - | - | - | - |