FastQC
FastQC is a quality control application for high throughputsequence data. It reads in sequence data in a variety of formats and can eitherprovide an interactive application to review the results of several differentQC checks, or create an HTML based report which can be integrated into apipeline.
https://www.bioinformatics.babraham.ac.uk/projects/fastqc/
Available modules
The overview below shows which FastQC installations are available per target architecture in the HPCC module system, ordered based on software version (new to old).
To start using FastQC, load one of these modules using a module load command like:
1 | |
(This data was automatically generated on Thu, 17 Apr 2025 at 12:00:12 EDT)
| neoverse_v1 | generic | zen2 | zen3 | zen4 | haswell | skylake_avx512 | |
|---|---|---|---|---|---|---|---|
| Grace Nodes | everywhere (except Grace nodes) | amd20 | amd22 | amd24 | intel16 | intel18,amd20-v100,amd21,intel21 | |
| FastQC/0.12.1-Java-11 | - | x | - | - | - | x | - |