HISAT2
HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) against the general human population (as well as against a single reference genome).
https://daehwankimlab.github.io/hisat2
Available modules
The overview below shows which HISAT2 installations are available per target architecture in the HPCC module system, ordered based on software version (new to old).
To start using HISAT2, load one of these modules using a module load command like:
1 | |
(This data was automatically generated on Thu, 19 Jun 2025 at 14:03:32 EDT)
| neoverse_v1 | generic | zen2 | zen3 | zen4 | haswell | skylake_avx512 | |
|---|---|---|---|---|---|---|---|
| Grace Nodes | everywhere (except Grace nodes) | amd20 | amd22 | amd24 | intel16 | intel18,amd20-v100,amd21,intel21 | |
| HISAT2/2.2.1-gompi-2023a | - | x | - | - | - | - | - |