HISAT2

HISAT2 is a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) against the general human population (as well as against a single reference genome).

https://daehwankimlab.github.io/hisat2

Available modules

The overview below shows which HISAT2 installations are available per target architecture in the HPCC module system, ordered based on software version (new to old).

To start using HISAT2, load one of these modules using a module load command like:

module load HISAT2/2.2.1-gompi-2023a

(This data was automatically generated on Thu, 10 Jul 2025 at 12:00:14 EDT)

	gateway	generic	zen2	zen3	zen4	haswell	skylake_avx512
	Gateway nodes	everywhere (except Grace nodes)	amd20	amd22	amd24	intel16	intel18,amd20-v100,amd21,intel21
HISAT2/2.2.1-gompi-2023a	-	x	-	-	-	-	-