Jellyfish
Jellyfish is a tool for fast, memory-efficient counting of k-mers in DNA.
http://www.genome.umd.edu/jellyfish.html
Available modules
The overview below shows which Jellyfish installations are available per target architecture in the HPCC module system, ordered based on software version (new to old).
To start using Jellyfish, load one of these modules using a module load command like:
1 | |
(This data was automatically generated on Thu, 08 May 2025 at 12:07:26 EDT)
| neoverse_v1 | generic | zen2 | zen3 | zen4 | haswell | skylake_avx512 | |
|---|---|---|---|---|---|---|---|
| Grace Nodes | everywhere (except Grace nodes) | amd20 | amd22 | amd24 | intel16 | intel18,amd20-v100,amd21,intel21 | |
| Jellyfish/2.3.1-GCC-12.3.0 | - | x | - | - | - | - | - |