MEME
The MEME Suite allows you to: * discover motifs using MEME, DREME (DNA only) or GLAM2 on groups of related DNA or protein sequences, * search sequence databases with motifs using MAST, FIMO, MCAST or GLAM2SCAN, * compare a motif to all motifs in a database of motifs, * associate motifs with Gene Ontology terms via their putative target genes, and * analyse motif enrichment using SpaMo or CentriMo.
https://meme-suite.org/meme/index.html
Available modules
The overview below shows which MEME installations are available per target architecture in the HPCC module system, ordered based on software version (new to old).
To start using MEME, load one of these modules using a module load command like:
1 | |
(This data was automatically generated on Thu, 08 May 2025 at 12:07:26 EDT)
| neoverse_v1 | generic | zen2 | zen3 | zen4 | haswell | skylake_avx512 | |
|---|---|---|---|---|---|---|---|
| Grace Nodes | everywhere (except Grace nodes) | amd20 | amd22 | amd24 | intel16 | intel18,amd20-v100,amd21,intel21 | |
| MEME/5.5.4-gompi-2022b | - | x | - | - | - | x | - |