Pysam
Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.
https://github.com/pysam-developers/pysam
Available modules
The overview below shows which Pysam installations are available per target architecture in the HPCC module system, ordered based on software version (new to old).
To start using Pysam, load one of these modules using a module load command like:
1 | |
(This data was automatically generated on Thu, 22 May 2025 at 12:00:16 EDT)
| neoverse_v1 | generic | zen2 | zen3 | zen4 | haswell | skylake_avx512 | |
|---|---|---|---|---|---|---|---|
| Grace Nodes | everywhere (except Grace nodes) | amd20 | amd22 | amd24 | intel16 | intel18,amd20-v100,amd21,intel21 | |
| Pysam/0.22.0-GCC-12.3.0 | - | x | - | - | - | - | - |