SAMtools
SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.
Available modules
The overview below shows which SAMtools installations are available per target architecture in the HPCC module system, ordered based on software version (new to old).
To start using SAMtools, load one of these modules using a module load command like:
1 | |
(This data was automatically generated on Thu, 17 Apr 2025 at 12:00:12 EDT)
| neoverse_v1 | generic | zen2 | zen3 | zen4 | haswell | skylake_avx512 | |
|---|---|---|---|---|---|---|---|
| Grace Nodes | everywhere (except Grace nodes) | amd20 | amd22 | amd24 | intel16 | intel18,amd20-v100,amd21,intel21 | |
| SAMtools/1.19.2-GCC-13.2.0 | - | x | - | - | - | - | - |
| SAMtools/1.18-GCC-12.3.0 | - | x | - | - | - | x | - |
| SAMtools/1.17-GCC-12.2.0 | - | x | - | - | - | x | - |