SAMtools
SAM Tools provide various utilities for manipulating alignments in the SAM format, including sorting, merging, indexing and generating alignments in a per-position format.
Available modules
The overview below shows which SAMtools installations are available per target architecture in the HPCC module system, ordered based on software version (new to old).
To start using SAMtools, load one of these modules using a module load command like:
module load SAMtools/1.19.2-GCC-13.2.0
(This data was automatically generated on Thu, 03 Jul 2025 at 12:32:57 EDT)
| gateway | generic | zen2 | zen3 | zen4 | haswell | skylake_avx512 | |
|---|---|---|---|---|---|---|---|
| Gateway nodes | everywhere (except Grace nodes) | amd20 | amd22 | amd24 | intel16 | intel18,amd20-v100,amd21,intel21 | |
| SAMtools/1.19.2-GCC-13.2.0 | - | x | - | - | - | - | - |
| SAMtools/1.18-GCC-12.3.0 | - | x | - | - | - | x | - |
| SAMtools/1.17-GCC-12.2.0 | - | x | - | - | - | x | - |