SRA-Toolkit
The SRA Toolkit, and the source-code SRA System Development Kit (SDK), will allow you to programmatically access data housed within SRA and convert it from the SRA format
https://github.com/ncbi/sra-tools
Available modules
The overview below shows which SRA-Toolkit installations are available per target architecture in the HPCC module system, ordered based on software version (new to old).
To start using SRA-Toolkit, load one of these modules using a module load command like:
1 | |
(This data was automatically generated on Thu, 17 Apr 2025 at 12:00:12 EDT)
| neoverse_v1 | generic | zen2 | zen3 | zen4 | haswell | skylake_avx512 | |
|---|---|---|---|---|---|---|---|
| Grace Nodes | everywhere (except Grace nodes) | amd20 | amd22 | amd24 | intel16 | intel18,amd20-v100,amd21,intel21 | |
| SRA-Toolkit/3.0.10-gompi-2023a | - | x | - | - | - | x | - |