TEtranscripts
TEtranscripts and TEcount takes RNA-seq (and similar data) and annotates readsto both genes & transposable elements.TEtranscripts then performs differential analysis using DESeq2.
https://github.com/mhammell-laboratory/TEtranscripts
Available modules
The overview below shows which TEtranscripts installations are available per target architecture in the HPCC module system, ordered based on software version (new to old).
To start using TEtranscripts, load one of these modules using a module load command like:
module load TEtranscripts/2.2.3-foss-2023a
(This data was automatically generated on Thu, 22 Jan 2026 at 12:03:27 EST)
| gateway | generic | zen2 | zen3 | zen4 | skylake_avx512 | |
|---|---|---|---|---|---|---|
| Gateway nodes | everywhere (except Grace nodes) | amd20 | amd22 | amd24 | intel18,amd20-v100,amd21,intel21 | |
| TEtranscripts/2.2.3-foss-2023a | - | x | - | - | - | - |