Trimmomatic
Trimmomatic performs a variety of useful trimming tasks for illumina paired-end and single ended data.The selection of trimming steps and their associated parameters are supplied on the command line.
http://www.usadellab.org/cms/?page=trimmomatic
Available modules
The overview below shows which Trimmomatic installations are available per target architecture in the HPCC module system, ordered based on software version (new to old).
To start using Trimmomatic, load one of these modules using a module load command like:
1 | |
(This data was automatically generated on Thu, 05 Jun 2025 at 12:15:06 EDT)
| neoverse_v1 | generic | zen2 | zen3 | zen4 | haswell | skylake_avx512 | |
|---|---|---|---|---|---|---|---|
| Grace Nodes | everywhere (except Grace nodes) | amd20 | amd22 | amd24 | intel16 | intel18,amd20-v100,amd21,intel21 | |
| Trimmomatic/0.39-Java-17 | - | x | - | - | - | - | - |
| Trimmomatic/0.39-Java-11 | - | x | - | - | - | - | - |