WFA2
The wavefront alignment (WFA) algorithm is an exact gap-affine algorithm that takes advantage of homologous regions between the sequences to accelerate the alignment process.
https://github.com/smarco/WFA2-lib
Available modules
The overview below shows which WFA2 installations are available per target architecture in the HPCC module system, ordered based on software version (new to old).
To start using WFA2, load one of these modules using a module load command like:
1 | |
(This data was automatically generated on Thu, 12 Jun 2025 at 12:01:24 EDT)
| neoverse_v1 | generic | zen2 | zen3 | zen4 | haswell | skylake_avx512 | |
|---|---|---|---|---|---|---|---|
| Grace Nodes | everywhere (except Grace nodes) | amd20 | amd22 | amd24 | intel16 | intel18,amd20-v100,amd21,intel21 | |
| WFA2/2.3.4-GCCcore-12.3.0 | - | x | - | - | - | - | - |