bcl2fastq2
bcl2fastq Conversion Software both demultiplexes data and converts BCL files generated by Illumina sequencing systems to standard FASTQ file formats for downstream analysis.
https://support.illumina.com/sequencing/sequencing_software/bcl2fastq-conversion-software.html
Available modules
The overview below shows which bcl2fastq2 installations are available per target architecture in the HPCC module system, ordered based on software version (new to old).
To start using bcl2fastq2, load one of these modules using a module load command like:
module load bcl2fastq2/2.20.0-GCC-12.2.0
(This data was automatically generated on Thu, 17 Jul 2025 at 12:00:15 EDT)
| gateway | generic | zen2 | zen3 | zen4 | haswell | skylake_avx512 | |
|---|---|---|---|---|---|---|---|
| Gateway nodes | everywhere (except Grace nodes) | amd20 | amd22 | amd24 | intel16 | intel18,amd20-v100,amd21,intel21 | |
| bcl2fastq2/2.20.0-GCC-12.2.0 | - | x | - | - | - | x | - |