Skip to content

bcl2fastq2

bcl2fastq Conversion Software both demultiplexes data and converts BCL files generated by Illumina sequencing systems to standard FASTQ file formats for downstream analysis.

https://support.illumina.com/sequencing/sequencing_software/bcl2fastq-conversion-software.html

Available modules

The overview below shows which bcl2fastq2 installations are available per target architecture in the HPCC module system, ordered based on software version (new to old).

To start using bcl2fastq2, load one of these modules using a module load command like:

module load bcl2fastq2/2.20.0-GCC-12.2.0

(This data was automatically generated on Thu, 17 Jul 2025 at 12:00:15 EDT)

gateway generic zen2 zen3 zen4 haswell skylake_avx512
Gateway nodes everywhere (except Grace nodes) amd20 amd22 amd24 intel16 intel18,amd20-v100,amd21,intel21
bcl2fastq2/2.20.0-GCC-12.2.0 - x - - - x -