bioawk
Bioawk is an extension to Brian Kernighan's awk, adding the support of several common biological data formats, including optionally gzip'ed BED, GFF, SAM, VCF, FASTA/Q and TAB-delimited formats with column names.
Available modules
The overview below shows which bioawk installations are available per target architecture in the HPCC module system, ordered based on software version (new to old).
To start using bioawk, load one of these modules using a module load command like:
1 | |
(This data was automatically generated on Thu, 19 Jun 2025 at 14:03:32 EDT)
| neoverse_v1 | generic | zen2 | zen3 | zen4 | haswell | skylake_avx512 | |
|---|---|---|---|---|---|---|---|
| Grace Nodes | everywhere (except Grace nodes) | amd20 | amd22 | amd24 | intel16 | intel18,amd20-v100,amd21,intel21 | |
| bioawk/1.0-GCC-11.2.0 | - | x | - | - | - | x | - |