bwa-mem2
The tool bwa-mem2 is the next version of the bwa-mem algorithm in bwa. Itproduces alignment identical to bwa and is ~1.3-3.1x faster depending on theuse-case, dataset and the running machine.
https://github.com/bwa-mem2/bwa-mem2
Available modules
The overview below shows which bwa-mem2 installations are available per target architecture in the HPCC module system, ordered based on software version (new to old).
To start using bwa-mem2, load one of these modules using a module load command like:
1 | |
(This data was automatically generated on Thu, 17 Apr 2025 at 12:00:12 EDT)
| neoverse_v1 | generic | zen2 | zen3 | zen4 | haswell | skylake_avx512 | |
|---|---|---|---|---|---|---|---|
| Grace Nodes | everywhere (except Grace nodes) | amd20 | amd22 | amd24 | intel16 | intel18,amd20-v100,amd21,intel21 | |
| bwa-mem2/2.2.1-intel-compilers-2023.1.0 | - | x | - | - | - | - | - |