miniprot
Miniprot aligns a protein sequence against a genome with affine gap penalty, splicing and frameshift.It is primarily intended for annotating protein-coding genes in a new species using known genes from other species.Miniprot is similar to GeneWise and Exonerate in functionality but it can map proteins to whole genomes and is muchfaster at the residue alignment step.
https://github.com/lh3/miniprot
Available modules
The overview below shows which miniprot installations are available per target architecture in the HPCC module system, ordered based on software version (new to old).
To start using miniprot, load one of these modules using a module load command like:
module load miniprot/0.13-GCCcore-12.3.0
(This data was automatically generated on Thu, 22 Jan 2026 at 12:03:27 EST)
| gateway | generic | zen2 | zen3 | zen4 | skylake_avx512 | |
|---|---|---|---|---|---|---|
| Gateway nodes | everywhere (except Grace nodes) | amd20 | amd22 | amd24 | intel18,amd20-v100,amd21,intel21 | |
| miniprot/0.13-GCCcore-12.3.0 | - | x | - | - | - | - |
| miniprot/0.13-GCC-12.3.0 | - | x | - | - | - | - |