snakemake
The Snakemake workflow management system is a tool to create reproducible and scalable data analyses.
https://snakemake.readthedocs.io
Available modules
The overview below shows which snakemake installations are available per target architecture in the HPCC module system, ordered based on software version (new to old).
To start using snakemake, load one of these modules using a module load command like:
module load snakemake/8.4.2-foss-2023a
(This data was automatically generated on Thu, 03 Jul 2025 at 12:32:57 EDT)
| gateway | generic | zen2 | zen3 | zen4 | haswell | skylake_avx512 | |
|---|---|---|---|---|---|---|---|
| Gateway nodes | everywhere (except Grace nodes) | amd20 | amd22 | amd24 | intel16 | intel18,amd20-v100,amd21,intel21 | |
| snakemake/8.4.2-foss-2023a | - | x | - | - | - | x | - |
snakemake/8.4.2-foss-2023a
This is a list of extensions included in the module:
argparse-dataclass-2.0.0, conda-inject-1.3.1, ConfigArgParse-1.7, connection-pool-0.0.3, datrie-0.8.2, dpath-2.1.6, fastjsonschema-2.19.1, humanfriendly-10.0, immutables-0.20, jupyter-core-5.7.1, nbformat-5.9.2, plac-1.4.2, reretry-0.11.8, smart-open-6.4.0, snakemake-8.4.2, snakemake-executor-plugin-cluster-generic-1.0.7, snakemake-executor-plugin-cluster-sync-0.1.3, snakemake-executor-plugin-flux-0.1.0, snakemake-executor-plugin-slurm-0.2.1, snakemake-executor-plugin-slurm-jobstep-0.1.10, snakemake-interface-common-1.15.2, snakemake-interface-executor-plugins-8.2.0, snakemake-interface-storage-plugins-3.0.0, stopit-1.1.2, throttler-1.2.2, toposort-1.10, yte-1.5.4