Homer
HOMER (Hypergeometric Optimization of Motif EnRichment) isa suite of tools for Motif Discovery and next-gen sequencing analysis. Itis a collection of command line programs for UNIX-style operating systemswritten in Perl and C++. HOMER was primarily written as a de novo motifdiscovery algorithm and is well suited for finding 8-20 bp motifs in largescale genomics data. HOMER contains many useful tools for analyzingChIP-Seq, GRO-Seq, RNA-Seq, DNase-Seq, Hi-C and numerous other types offunctional genomics sequencing data sets.
Available modules
The overview below shows which Homer installations are available per target architecture in the HPCC module system, ordered based on software version (new to old).
To start using Homer, load one of these modules using a module load command like:
1 | |
(This data was automatically generated on Thu, 17 Apr 2025 at 12:00:12 EDT)
| neoverse_v1 | generic | zen2 | zen3 | zen4 | haswell | skylake_avx512 | |
|---|---|---|---|---|---|---|---|
| Grace Nodes | everywhere (except Grace nodes) | amd20 | amd22 | amd24 | intel16 | intel18,amd20-v100,amd21,intel21 | |
| Homer/4.11-GCC-12.3.0 | - | x | - | - | - | - | - |