PyMOL
PyMOL is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories.It also includes molecular editing, ray tracing, and movies. Open Source PyMOL is free to everyone!
https://github.com/schrodinger/pymol-open-source
Available modules
The overview below shows which PyMOL installations are available per target architecture in the HPCC module system, ordered based on software version (new to old).
To start using PyMOL, load one of these modules using a module load command like:
1 | |
(This data was automatically generated on Thu, 17 Apr 2025 at 12:00:12 EDT)
| neoverse_v1 | generic | zen2 | zen3 | zen4 | haswell | skylake_avx512 | |
|---|---|---|---|---|---|---|---|
| Grace Nodes | everywhere (except Grace nodes) | amd20 | amd22 | amd24 | intel16 | intel18,amd20-v100,amd21,intel21 | |
| PyMOL/2.5.0-foss-2023a | - | x | - | - | - | - | - |
PyMOL/2.5.0-foss-2023a
This is a list of extensions included in the module:
Pmw-2.0.1, PyMOL-2.5.0