PyMOL

PyMOL is a Python-enhanced molecular graphics tool. It excels at 3D visualization of proteins, small molecules, density, surfaces, and trajectories.It also includes molecular editing, ray tracing, and movies. Open Source PyMOL is free to everyone!

https://github.com/schrodinger/pymol-open-source

Available modules

The overview below shows which PyMOL installations are available per target architecture in the HPCC module system, ordered based on software version (new to old).

To start using PyMOL, load one of these modules using a module load command like:

module load PyMOL/2.5.0-foss-2023a

(This data was automatically generated on Thu, 10 Jul 2025 at 12:00:14 EDT)

	gateway	generic	zen2	zen3	zen4	haswell	skylake_avx512
	Gateway nodes	everywhere (except Grace nodes)	amd20	amd22	amd24	intel16	intel18,amd20-v100,amd21,intel21
PyMOL/2.5.0-foss-2023a	-	x	-	-	-	-	-

PyMOL/2.5.0-foss-2023a

This is a list of extensions included in the module:

Pmw-2.0.1, PyMOL-2.5.0