Stacks
Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.
https://catchenlab.life.illinois.edu/stacks/
Available modules
The overview below shows which Stacks installations are available per target architecture in the HPCC module system, ordered based on software version (new to old).
To start using Stacks, load one of these modules using a module load command like:
1 | |
(This data was automatically generated on Thu, 17 Apr 2025 at 12:00:12 EDT)
| neoverse_v1 | generic | zen2 | zen3 | zen4 | haswell | skylake_avx512 | |
|---|---|---|---|---|---|---|---|
| Grace Nodes | everywhere (except Grace nodes) | amd20 | amd22 | amd24 | intel16 | intel18,amd20-v100,amd21,intel21 | |
| Stacks/2.64-foss-2023a | - | x | - | - | - | - | - |
| Stacks/2.62-foss-2023a | - | x | - | - | - | - | - |