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TransDecoder

TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks.

https://github.com/TransDecoder/TransDecoder/wiki

Available modules

The overview below shows which TransDecoder installations are available per target architecture in the HPCC module system, ordered based on software version (new to old).

To start using TransDecoder, load one of these modules using a module load command like:

module load TransDecoder/5.7.0-GCC-12.3.0

(This data was automatically generated on Thu, 03 Jul 2025 at 12:32:57 EDT)

gateway generic zen2 zen3 zen4 haswell skylake_avx512
Gateway nodes everywhere (except Grace nodes) amd20 amd22 amd24 intel16 intel18,amd20-v100,amd21,intel21
TransDecoder/5.7.0-GCC-12.3.0 - x - - - - -
TransDecoder/5.5.0-GCC-11.3.0 - - - - - x -