Trinotate

Trinotate is a comprehensive annotation suite designed for automatic functionalannotation of transcriptomes, particularly de novo assembled transcriptomes,from model or non-model organisms. Trinotate makes use of a number of differentwell referenced methods for functional annotation including homology search toknown sequence data (BLAST+/SwissProt), protein domain identification(HMMER/PFAM), protein signal peptide and transmembrane domain prediction(signalP/tmHMM), and leveraging various annotation databases (eggNOG/GO/Keggdatabases). All functional annotation data derived from the analysis oftranscripts is integrated into a SQLite database which allows fast efficientsearching for terms with specific qualities related to a desired scientifichypothesis or a means to create a whole annotation report for a transcriptome.

https://github.com/Trinotate/Trinotate/wiki

Available modules

The overview below shows which Trinotate installations are available per target architecture in the HPCC module system, ordered based on software version (new to old).

To start using Trinotate, load one of these modules using a module load command like:

module load Trinotate/4.0.2-foss-2023a

(This data was automatically generated on Thu, 19 Jun 2025 at 14:03:32 EDT)

	neoverse_v1	generic	zen2	zen3	zen4	haswell	skylake_avx512
	Grace Nodes	everywhere (except Grace nodes)	amd20	amd22	amd24	intel16	intel18,amd20-v100,amd21,intel21
Trinotate/4.0.2-foss-2023a	-	x	-	-	-	-	-