VSEARCH

VSEARCH supports de novo and reference based chimera detection, clustering, full-length and prefix dereplication, rereplication, reverse complementation, masking, all-vs-all pairwise global alignment, exact and global alignment searching, shuffling, subsampling and sorting. It also supports FASTQ file analysis, filtering, conversion and merging of paired-end reads.

https://github.com/torognes/vsearch

Available modules

The overview below shows which VSEARCH installations are available per target architecture in the HPCC module system, ordered based on software version (new to old).

To start using VSEARCH, load one of these modules using a module load command like:

module load VSEARCH/2.28.1-GCC-12.3.0

(This data was automatically generated on Thu, 04 Sep 2025 at 12:00:25 EDT)

	gateway	generic	zen2	zen3	zen4	skylake_avx512
	Gateway nodes	everywhere (except Grace nodes)	amd20	amd22	amd24	intel18,amd20-v100,amd21,intel21
VSEARCH/2.28.1-GCC-12.3.0	-	x	-	-	-	-
VSEARCH/2.25.0-GCC-12.3.0	-	x	-	-	-	-