VSEARCH
VSEARCH supports de novo and reference based chimera detection, clustering, full-length and prefix dereplication, rereplication, reverse complementation, masking, all-vs-all pairwise global alignment, exact and global alignment searching, shuffling, subsampling and sorting. It also supports FASTQ file analysis, filtering, conversion and merging of paired-end reads.
https://github.com/torognes/vsearch
Available modules
The overview below shows which VSEARCH installations are available per target architecture in the HPCC module system, ordered based on software version (new to old).
To start using VSEARCH, load one of these modules using a module load command like:
1 | |
(This data was automatically generated on Thu, 22 May 2025 at 12:00:16 EDT)
| neoverse_v1 | generic | zen2 | zen3 | zen4 | haswell | skylake_avx512 | |
|---|---|---|---|---|---|---|---|
| Grace Nodes | everywhere (except Grace nodes) | amd20 | amd22 | amd24 | intel16 | intel18,amd20-v100,amd21,intel21 | |
| VSEARCH/2.28.1-GCC-12.3.0 | - | x | - | - | - | - | - |
| VSEARCH/2.25.0-GCC-12.3.0 | - | x | - | - | - | - | - |