cutadapt

Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types of unwanted sequence from your high-throughput sequencing reads.

https://opensource.scilifelab.se/projects/cutadapt/

Available modules

The overview below shows which cutadapt installations are available per target architecture in the HPCC module system, ordered based on software version (new to old).

To start using cutadapt, load one of these modules using a module load command like:

module load cutadapt/5.0-GCCcore-13.2.0

(This data was automatically generated on Thu, 31 Jul 2025 at 12:00:14 EDT)

	gateway	generic	zen2	zen3	zen4	haswell	skylake_avx512
	Gateway nodes	everywhere (except Grace nodes)	amd20	amd22	amd24	intel16	intel18,amd20-v100,amd21,intel21
cutadapt/5.0-GCCcore-13.2.0	-	x	-	-	-	-	-
cutadapt/4.4-GCCcore-12.2.0	-	x	-	-	-	x	-

cutadapt/5.0-GCCcore-13.2.0

This is a list of extensions included in the module:

cutadapt-5.0, dnaio-1.2.3, setuptools-scm-8.1.0, xopen-1.7.0

cutadapt/4.4-GCCcore-12.2.0

This is a list of extensions included in the module:

cutadapt-4.4, dnaio-0.10.0, xopen-1.7.0