deepTools
deepTools is a suite of python tools particularly developed for the efficient analysis of high-throughput sequencing data, such as ChIP-seq, RNA-seq or MNase-seq.
https://deeptools.readthedocs.io/
Available modules
The overview below shows which deepTools installations are available per target architecture in the HPCC module system, ordered based on software version (new to old).
To start using deepTools, load one of these modules using a module load command like:
1 | |
(This data was automatically generated on Thu, 17 Apr 2025 at 12:00:12 EDT)
| neoverse_v1 | generic | zen2 | zen3 | zen4 | haswell | skylake_avx512 | |
|---|---|---|---|---|---|---|---|
| Grace Nodes | everywhere (except Grace nodes) | amd20 | amd22 | amd24 | intel16 | intel18,amd20-v100,amd21,intel21 | |
| deepTools/3.5.5-foss-2023a | - | x | - | - | - | - | - |
deepTools/3.5.5-foss-2023a
This is a list of extensions included in the module:
deepTools-3.5.5, deeptoolsintervals-0.1.9, numpydoc-1.5.0, py2bit-0.3.0