pblat

When the query file format is fasta, you can specify many threads to process it. It can reduce run time linearly, and use almost equal memory as the original blat program. This is useful when you blat a big query file to a huge reference like human whole genome sequence.

https://github.com/icebert/pblat

Available modules

The overview below shows which pblat installations are available per target architecture in the HPCC module system, ordered based on software version (new to old).

To start using pblat, load one of these modules using a module load command like:

module load pblat/2.5.1-foss-2022b

(This data was automatically generated on Thu, 19 Jun 2025 at 14:03:32 EDT)

	neoverse_v1	generic	zen2	zen3	zen4	haswell	skylake_avx512
	Grace Nodes	everywhere (except Grace nodes)	amd20	amd22	amd24	intel16	intel18,amd20-v100,amd21,intel21
pblat/2.5.1-foss-2022b	-	x	-	-	-	-	-