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Installing Bactopia on the HPCC (2022-10-03)
Bactopia is a bacteria genome analysis tool. It can be found at https://bactopia.github.io/v2.1.1/ and has extensive documentation. However, if you follow the instructions for installation on the MSU HPCC you may run into issues with solving the Python environment with Conda.
Download miniconda https://docs.conda.io/en/latest/miniconda.html
Activate the miniconda environment
Downloaded and activate bactopia:
For further information, see this github issue: https://github.com/bactopia/bactopia/issues/355