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HTSeq

HTSeq is a Python package for analysis of high-throughput sequencing data. It's available upon a fresh login to a dev-node. For example, you can call command htseq-count directly without needing to load specific modules. This is because HTSeq is installed to the default Python distribution (you can run module list to see the list of modules loaded by default).

If you happen to run a module purge command in the middle of your work, you need to load the default Python back again in order to use HTSeq. To do so:

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module purge
module load GCC/6.4.0-2.28 OpenMPI/2.1.2 Python/3.6.4

Tip: if you want to go back to the original shell environment immediately after your login, you can run: exec bash -l